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Neuroimaging software is used in neuroimaging study the structure and function of the brain and in the developemnt of stereotaxic atlases .

• 3D Slicer developed at Harvard has many uses, including diffusion tensor imaging tractography.
• Analysis of Functional NeuroImages (AFNI) [1]
• Analyze developed by the Biomedical Imaging Resource (BIR) at Mayo Clinic. AnalyzeDirect homepage
• Bioimage Suite .
• BrainMagix
• BrainVISA [2]
• BrainVoyager [3]
• CamBA [4]
• Camino Open-source toolkit for diffusion MRI. Camino homepage
• Caret [5] Van Essen Lab, Washington University in St. Louis
• FMRIB Software Library (FSL) [6]
• FreeSurfer [7]
• ISAS (Ictal-Interictal SPECT Analysis by SPM)
• Neuroimaging software installation support
• LONI Pipeline Laboratory of Neuro Imaging, UCLA
• Mango, developed at the Research Imaging Center, University of Texas Health Science Center at San Antonio
• MNI MINC McConnell Brain Imaging Center, Montreal Neurological Institute, McGill University
• MRIcro [8]
• NeuroLens
• NIfTI [9]
• Statistical parametric mapping (SPM) [10]